baten kaitos and the game boy advance kingdom hearts (can't remember the full title off hand right now) both have a battle system based on cards...not sure if they'd fit into what you're looking for or not (i haven't played the vast majority of games on this list to be able to compare 'em), but they might be worth looking into.
Just as ape, I'm not very familiar with the genre and the only card battle video game I have played so far is the one I'll suggest. I'm not sure if it fits to the list though.
Well, the game is Arcomage and you can find it here:
http://www.listal.com/game/acromage-pc-games
Final fantasy had a card game once!